Fluctuations of entropy production in the isokinetic ensemble

We discuss the microscopic definition of entropy production rate in a model of a dissipative system: a sheared fluid in which the kinetic energy is kept constant via a Gaussian thermostat. The total phase space contraction rate is the sum of two statistically independent contributions: the first one is due to the work of the conservative forces, is independent of the driving force and does not vanish at zero drive, making the system non-conservative also in equilibrium. The second is due to the work of the dissipative forces, and is responsible for the average entropy production; the distribution of its fluctuations is found to verify the Fluctuation Relation of Gallavotti and Cohen. The distribution of the fluctuations of the total phase space contraction rate also verify the Fluctuation Relation. It is compared with the same quantity calculated in the isoenergetic ensemble: we find that the two ensembles are equivalent, as conjectured by Gallavotti. Finally, we discuss the implication of our results for experiments trying to verify the validity of the FR.Comment: 8 pages, 4 figure

First-passage time of run-and-tumble particles

We solve the problem of first-passage time for run-and-tumble particles in one dimension. Exact expression is derived for the mean first-passage time in the general case, considering external force-fields and chemotactic-fields, giving rise to space dependent swim-speed and tumble rate. Agreement between theoretical formulae and numerical simulations is obtained in the analyzed case studies -- constant and sinusoidal force fields, constant gradient chemotactic field. Reported findings can be useful to get insights into very different phenomena involving active particles, such as bacterial motion in external fields, intracellular transport, cell migration, animal foraging

Configurational entropy of hard spheres

We numerically calculate the configurational entropy S_conf of a binary mixture of hard spheres, by using a perturbed Hamiltonian method trapping the system inside a given state, which requires less assumptions than the previous methods [R.J. Speedy, Mol. Phys. 95, 169 (1998)]. We find that S_conf is a decreasing function of packing fraction f and extrapolates to zero at the Kauzmann packing fraction f_K = 0.62, suggesting the possibility of an ideal glass-transition for hard spheres system. Finally, the Adam-Gibbs relation is found to hold.Comment: 10 pages, 6 figure

Effective run-and-tumble dynamics of bacteria baths

{\it E. coli} bacteria swim in straight runs interrupted by sudden reorientation events called tumbles. The resulting random walks give rise to density fluctuations that can be derived analytically in the limit of non interacting particles or equivalently of very low concentrations. However, in situations of practical interest, the concentration of bacteria is always large enough to make interactions an important factor. Using molecular dynamics simulations, we study the dynamic structure factor of a model bacterial bath for increasing values of densities. We show that it is possible to reproduce the dynamics of density fluctuations in the system using a free run-and-tumble model with effective fitting parameters. We discuss the dependence of these parameters, e.g., the tumbling rate, tumbling time and self-propulsion velocity, on the density of the bath

Run-and-tumble particles in speckle fields

The random energy landscapes developed by speckle fields can be used to confine and manipulate a large number of micro-particles with a single laser beam. By means of molecular dynamics simulations, we investigate the static and dynamic properties of an active suspension of swimming bacteria embedded into speckle patterns. Looking at the correlation of the density fluctuations and the equilibrium density profiles, we observe a crossover phenomenon when the forces exerted by the speckles are equal to the bacteria's propulsion

Phase diagram and complexity of mode-locked lasers: from order to disorder

We investigate mode-locking processes in lasers displaying a variable degree of structural randomness, from standard optical cavities to multiple-scattering media. By employing methods mutuated from spin-glass theory, we analyze the mean-field Hamiltonian and derive a phase-diagram in terms of the pumping rate and the degree of disorder. Three phases are found: i) paramagnetic, corresponding to a noisy continuous wave emission, ii) ferromagnetic, that describes the standard passive mode-locking, and iii) the spin-glass in which the phases of the electromagnetic field are frozen in a exponentially large number of configurations. The way the mode-locking threshold is affected by the amount of disorder is quantified. The results are also relevant for other physical systems displaying a random Hamiltonian, like Bose-Einstein condensates and nonlinear optical beams.Comment: 4 pages, 2 figure

Saddles and softness in simple model liquids

We report a numerical study of saddles properties of the potential energy landscape for soft spheres with different softness, i.e. different power n of the interparticle repulsive potential. We find that saddle-based quantities rescale into master curves once energies and temperatures are scaled by mode-coupling temperature T_MCT, confirming and generalizing previous findings obtained for Lennard-Jones like models.Comment: 2 pages, 2 figure

On G-fractional diffusion models in bounded domains

In the recent literature, the g-subdiffusion equation involving Caputo fractional derivatives with respect to another function has been studied in relation to anomalous diffusions with a continuous transition between different subdiffusive regimes. In this paper we study the problem of g-fractional diffusion in a bounded domain with absorbing boundaries. We find the explicit solution for the initial-boundary value problem and we study the first passage time distribution and the mean first-passage time (MFPT). An interestin outcome is the proof that with a particular choice of the function $g$ it is possible to obtain a finite MFPT, differently from the anomalous diffusion described by a fractional heat equation involving the classical Caputo derivative